I've thought about this animal quite a bit in the last few years. Every body feature makes sense to me but the flattened head is a mystery.
There is one possible explanation which springs to mind. This animal may have a distinctly unusual hormonal problem(s), which has led to its paedmorphism. This problem or problems may be different to those found in species who more regularly undergo paedmorphism (paedmorphism is generally a product of hormone regulation changes, suppression of a certain hormone or more than one of those involved in growth triggers).
If we accept this as true, this animal may not be what a typical Cynops ensicauda would look like because the cause of its paedomorphism is distinctly different to the usual cause of paedmorphism.
This hormonal problem could have influenced the shape of the head during development, as well as inducing paedmorphism. Since there are no known (correct me if I'm wrong Tim) paedmorphs of this species, it seems likely to me that paedomorphism in this specimen is not due to the traditional causes of paedomorphism.
All just hypothesis, but a possibility nonetheless.