hello. i work in a drosophila lab, and i can tell you that elimination of mites from fly cultures IS possible, but it takes some work. there are a few guidlines you have to follow to eliminate mites from your cultures.
1) keep things cleen
2) pass your flies often.
its not uncommon to recieve fly stocks that are infested with mites. and mites are an inevitability when working with flies. the best you can do is learn to deal with and control infestations.
to start, youll want to wipe down your working surface with ethanol or some other antiseptic to ensure a clean working surface both BEFORE and AFTER passing your flies. pass your flies to fresh vials or containers of food every few days and dispose of old ones (make sure you take out the garbage often or freeze old vials to ensure that mites are gone from the room you keep the flies or at least are dead). fruit flies are generally very clean and will groom themselves often. continually passing them will help get rid of mite eggs and adults by the time you are done (you should be able to have the mite infestation under control after about a week of passing). you can also help control future outbreaks of mites by keeping your vials of flies on sheets of anti-mite paper. this wont completley eliminate the possiblity of mites, but at the very least, it helps prevent mites from going from vial to vial, so if one vial becomes infested, it will help prevent the infestation from spreading to others.
remember, mites love to feed on old and drying food, so when youre maintaining your fly stock, pass them and toss the old vial when the food looks like its beginning to go bad, but remember to keep them long enough so that enough have emerged from their pupae to maintain the line. since youre using them for food, i would say remember to keep them amplified as well. pass your flies every 3 or so days and keep every single vial. in about 10 days youll have more flies than youll ever want, and dont forget to use fresh flies to amplify. female D. melanogaster begin to have a reduction in egg production when theyre about 2 weeks old.
good luck.